Open-Source AI/ML Segmentation

Access AI/ML medical segmentation for free.

Install the software in order as presented in this guide so everything has access to their dependencies.

Software installation

• Hardware Requirements
  • GPU Compatibility
• Linux
  • Ubuntu
  • Useful Ubuntu tips
• Nvidia CUDA
  • CUDA Installation
• Python Tools
  • Python
  • NumPy
  • PyTorch
• Docker
  • Installation
  • Set up NVIDIA Container Toolkit
• Clara
  • Clara Train SDK Installation
• AIAA (AI-Assisted Annotation)
  • AIAA Installation
• NGC CLI
  • Login to your NVIDIA account
  • AMD64 Linux NGC CLI Installation
• MONAI
  • MONAI Installation
  • MONAI Label
  • Update MONAI
• 3D Slicer
  • Install 3D Slicer
  • MONAI Label plugin
• The Medical Imaging Interaction Toolkit (MITK)

Academic articles

Academic articles: Segmentation (non-interactive), Annotation (image and user input), Deep grow (foreground and background clicks).